{"id":4039,"date":"2021-05-14T22:21:32","date_gmt":"2021-05-14T22:21:32","guid":{"rendered":"https:\/\/er-c.org\/?page_id=4039"},"modified":"2025-01-15T11:12:02","modified_gmt":"2025-01-15T11:12:02","slug":"spring","status":"publish","type":"page","link":"https:\/\/er-c.org\/index.php\/software\/cryo-em\/spring\/","title":{"rendered":"Spring"},"content":{"rendered":"<div class=\"wp-block-image is-style-default ticss-553e9f87\">\n<figure class=\"aligncenter size-full is-resized\"><img loading=\"lazy\" decoding=\"async\" width=\"626\" height=\"240\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/03\/Software.jpg\" alt=\"\" class=\"wp-image-1513\" style=\"width:1200px;height:190px\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/03\/Software.jpg 626w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/03\/Software-300x115.jpg 300w\" sizes=\"auto, (max-width: 626px) 100vw, 626px\" \/><\/figure>\n<\/div>\n\n<div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-headline so-widget-sow-headline-default-feea9c97c678\"\n\t\t\t\n\t\t><div class=\"sow-headline-container \">\n\t\t\t\t\t\t\t<h1 class=\"sow-headline\">\n\t\t\t\t\t\tSpring\t\t\t\t\t\t<\/h1>\n\t\t\t\t\t\t\t\t\t\t\t<div class=\"decoration\">\n\t\t\t\t\t\t<div class=\"decoration-inside\"><\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t\t\t\t<h3 class=\"sow-sub-headline\">\n\t\t\t\t\t\tsingle-particle based helical reconstruction software suite\t\t\t\t\t\t<\/h3>\n\t\t\t\t\t\t<\/div>\n<\/div>\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div id=\"wp-block-themeisle-blocks-advanced-columns-27948cc6\" class=\"wp-block-themeisle-blocks-advanced-columns has-1-columns has-desktop-equal-layout has-tablet-equal-layout has-mobile-equal-layout has-vertical-unset has-default-gap\"><div class=\"wp-block-themeisle-blocks-advanced-columns-overlay\"><\/div><div class=\"innerblocks-wrap\">\n<div id=\"wp-block-themeisle-blocks-advanced-column-cf76d8a1\" class=\"wp-block-themeisle-blocks-advanced-column\">\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:80%\">\n<p style=\"text-align: justify;\"><strong><a class=\"reference external\" href=\"http:\/\/spring.fz-juelich.de\/\" target=\"_blank\" rel=\"noopener\">SPRING<\/a><\/strong> (<strong>S<\/strong> ingle <strong>P<\/strong> article <strong>R<\/strong> econstruction from <strong>I<\/strong> mages of k<strong>N<\/strong> own <strong>G<\/strong> eometry) is a single-particle based helical reconstruction package for electron cryo-micrographs and has been used to determine 3D structures of a variety of highly ordered and less ordered specimens. Spring provides the entire single-particle based work-flow required for helical reconstruction including:<\/p>\n<p style=\"text-align: left;\">&#8211; Classification<\/p>\n<p style=\"text-align: left;\">&#8211; Helical symmetry determination and refinement tools<\/p>\n<p style=\"text-align: left;\">&#8211; High-resolution structure refinement<\/p>\n<p style=\"text-align: left;\">&#8211; Multi-symmetry structure refinement<\/p>\n<p style=\"text-align: justify;\">Spring is still maintained in the Sachse lab at the <strong><a class=\"reference external\" href=\"http:\/\/www.fz-juelich.de\/er-c\/er-c-3\" target=\"_blank\" rel=\"noopener\">Ernst-Ruska Centre<\/a><\/strong> of the <strong><a class=\"reference external\" href=\"http:\/\/www.fz-juelich.de\" target=\"_blank\" rel=\"noopener\">Research Centre Juelich<\/a><\/strong> for the Unix operating systems of MacOSX and Linux.<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div class=\"wp-block-buttons is-layout-flex wp-block-buttons-is-layout-flex\">\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-white-color has-text-color has-background wp-element-button\" href=\"https:\/\/spring.fz-juelich.de\/\" style=\"background-color:#023d6b\" target=\"_blank\" rel=\"noreferrer noopener\">Access<\/a><\/div>\n<\/div>\n\n\n\n<div style=\"height:20px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div id=\"citationDataDisplay\" class=\"transparent\">\n<div id=\"citationText\" style=\"text-align: left;\" tabindex=\"0\">Ambroise Desfosses, Rodolfo Ciuffa, Irina Gutsche, Carsten Sachse,<\/div>\n<div style=\"text-align: left;\" tabindex=\"0\">SPRING \u2013 An image processing package for single-particle based helical reconstruction from electron cryomicrographs,<\/div>\n<div style=\"text-align: left;\" tabindex=\"0\">Journal of Structural Biology, Volume 185, Issue 1, 2014, Pages 15-26, ISSN 1047-8477,<\/div>\n<div style=\"text-align: left;\" tabindex=\"0\">https:\/\/doi.org\/10.1016\/j.jsb.2013.11.003.<\/div>\n<\/div>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div class=\"wp-block-buttons is-layout-flex wp-block-buttons-is-layout-flex\">\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-white-color has-text-color has-background wp-element-button\" href=\"https:\/\/doi.org\/10.1016\/j.jsb.2013.11.003\" style=\"background-color:#023d6b\" target=\"_blank\" rel=\"noreferrer noopener\">View Article<\/a><\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n<\/div>\n<\/div>\n<\/div><\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":2,"featured_media":0,"parent":3887,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_themeisle_gutenberg_block_has_review":false,"footnotes":""},"class_list":["post-4039","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/4039","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/comments?post=4039"}],"version-history":[{"count":13,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/4039\/revisions"}],"predecessor-version":[{"id":9689,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/4039\/revisions\/9689"}],"up":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3887"}],"wp:attachment":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/media?parent=4039"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}