{"id":3921,"date":"2021-05-13T16:13:56","date_gmt":"2021-05-13T16:13:56","guid":{"rendered":"https:\/\/er-c.org\/?page_id=3921"},"modified":"2025-01-15T11:03:50","modified_gmt":"2025-01-15T11:03:50","slug":"tomato","status":"publish","type":"page","link":"https:\/\/er-c.org\/index.php\/software\/stem-data-analysis\/tomato\/","title":{"rendered":"tomato"},"content":{"rendered":"<div class=\"wp-block-image is-style-default ticss-36e3a365\">\n<figure class=\"aligncenter size-full is-resized\"><img loading=\"lazy\" decoding=\"async\" width=\"626\" height=\"240\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/03\/Software.jpg\" alt=\"\" class=\"wp-image-1513\" style=\"width:1200px;height:190px\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/03\/Software.jpg 626w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/03\/Software-300x115.jpg 300w\" sizes=\"auto, (max-width: 626px) 100vw, 626px\" \/><\/figure>\n<\/div>\n\n<div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-headline so-widget-sow-headline-default-feea9c97c678\"\n\t\t\t\n\t\t><div class=\"sow-headline-container \">\n\t\t\t\t\t\t\t<h1 class=\"sow-headline\">\n\t\t\t\t\t\ttomato\t\t\t\t\t\t<\/h1>\n\t\t\t\t\t\t\t\t\t\t\t<div class=\"decoration\">\n\t\t\t\t\t\t<div class=\"decoration-inside\"><\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t\t\t\t<h3 class=\"sow-sub-headline\">\n\t\t\t\t\t\tmulti-platform tomography suite\t\t\t\t\t\t<\/h3>\n\t\t\t\t\t\t<\/div>\n<\/div>\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div id=\"wp-block-themeisle-blocks-advanced-columns-27948cc6\" class=\"wp-block-themeisle-blocks-advanced-columns has-1-columns has-desktop-equal-layout has-tablet-equal-layout has-mobile-equal-layout has-vertical-unset has-default-gap\"><div class=\"wp-block-themeisle-blocks-advanced-columns-overlay\"><\/div><div class=\"innerblocks-wrap\">\n<div id=\"wp-block-themeisle-blocks-advanced-column-cf76d8a1\" class=\"wp-block-themeisle-blocks-advanced-column\">\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:80%\">\n<div align=\"left\">\n<div style=\"text-align: center;\" align=\"left\"><img loading=\"lazy\" decoding=\"async\" class=\"aligncenter size-full wp-image-5726\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2022\/07\/screenshot.jpg\" alt=\"\" width=\"800\" height=\"600\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2022\/07\/screenshot.jpg 800w, https:\/\/er-c.org\/wp-content\/uploads\/2022\/07\/screenshot-300x225.jpg 300w, https:\/\/er-c.org\/wp-content\/uploads\/2022\/07\/screenshot-768x576.jpg 768w\" sizes=\"auto, (max-width: 800px) 100vw, 800px\" \/><\/div>\n<div style=\"text-align: center;\" align=\"left\">[<a>tomato running under Mac OS X<\/a>}<\/div>\n<\/div>\n<h1 align=\"left\">\u00a0<\/h1>\n<p>\u00a0<\/p>\n<div align=\"left\">\n<div align=\"left\">\u00a0<\/div>\n<div style=\"text-align: justify;\" align=\"left\">tomato is a program for the three-dimensional object reconstruction from a series of projection images. The program was designed to address specific issues of the refinement of the reconstruction.It includes common approaches for the reconstruction procedure as well as a graphical user interface. It is therefore useful also in a productive environment. So far, tomato reconstructs from single axis tilt series. tomato is written in the <strong><a href=\"http:\/\/www.rsinc.com\/idl\" target=\"_blank\" rel=\"noopener\"><span class=\"s1\">IDL<\/span><\/a><\/strong> programming language which supports Apple Mac OS X, LinuX and Windows. A valid installation of the freely distributed IDL virtual machine is required. Visit the <strong><a href=\"http:\/\/www.rsinc.com\/idl\" target=\"_blank\" rel=\"noopener\"><span class=\"s1\">IDL<\/span><\/a><\/strong> website for further information.<\/div>\n<h6 align=\"left\">\u00a0<\/h6>\n<h6 style=\"text-align: left;\" align=\"left\"><br \/>The free version of tomato includes the following features:<\/h6>\n<\/div>\n<div align=\"left\">\n<div align=\"left\">\n<ul class=\"ul1\" style=\"list-style-type: square;\">\n<li class=\"li4\" style=\"text-align: left;\">import of three-dimensional data stacks in mrc format<\/li>\n<li class=\"li4\" style=\"text-align: left;\">export to mrc or animated gif format<\/li>\n<li class=\"li4\" style=\"text-align: left;\">multiple data stack handling<\/li>\n<li class=\"li4\" style=\"text-align: left;\">simple data stack manipulations<\/li>\n<li class=\"li4\" style=\"text-align: left;\">sub-pixel accurate cross-correlation alignment<\/li>\n<li class=\"li4\" style=\"text-align: left;\">interactive refinement of alignment properties (tilt axis offset, rotation, drift)<\/li>\n<li class=\"li4\" style=\"text-align: left;\">projection and back projection based on the 2D Radon transform<\/li>\n<li class=\"li4\" style=\"text-align: left;\">weighted back projection<\/li>\n<\/ul>\n<h6>\u00a0<\/h6>\n<h6 class=\"p3\" style=\"text-align: left;\"><br \/>The licensed version of tomato includes the following features:<\/h6>\n<ul class=\"ul1\" style=\"list-style-type: square;\">\n<li class=\"li4\" style=\"text-align: left;\">refinement routines based on grid search algorithms and pseudo-projections<\/li>\n<li class=\"li4\" style=\"text-align: left;\">simultaneous iterative reconstruction technique<\/li>\n<\/ul>\n<\/div>\n<\/div>\n<p>\u00a0<\/p>\n<p style=\"text-align: left;\">Author: Lothar Houben<\/p>\n\n\n\n<div style=\"height:20px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div class=\"wp-block-buttons is-layout-flex wp-block-buttons-is-layout-flex\">\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-white-color has-text-color has-background wp-element-button\" href=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/tomato.zip\" style=\"background-color:#023d6b\" target=\"_blank\" rel=\"noreferrer noopener\">Download Software<\/a><\/div>\n\n\n\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-white-color has-text-color has-background wp-element-button\" href=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/TomatoDemoData.zip\" style=\"background-color:#023d6b\" target=\"_blank\" rel=\"noreferrer noopener\">Download Demo Data<\/a><\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n<\/div>\n<\/div>\n<\/div><\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":2,"featured_media":0,"parent":3885,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_themeisle_gutenberg_block_has_review":false,"footnotes":""},"class_list":["post-3921","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3921","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/comments?post=3921"}],"version-history":[{"count":12,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3921\/revisions"}],"predecessor-version":[{"id":9680,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3921\/revisions\/9680"}],"up":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3885"}],"wp:attachment":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/media?parent=3921"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}