{"id":3909,"date":"2021-05-13T16:09:27","date_gmt":"2021-05-13T16:09:27","guid":{"rendered":"https:\/\/er-c.org\/?page_id=3909"},"modified":"2025-01-09T11:41:57","modified_gmt":"2025-01-09T11:41:57","slug":"holography-package-for-hyperspy","status":"publish","type":"page","link":"https:\/\/er-c.org\/index.php\/software\/stem-data-analysis\/holography-package-for-hyperspy\/","title":{"rendered":"Holography package for HyperSpy"},"content":{"rendered":"<div class=\"wp-block-image is-style-default ticss-078d30cf\">\n<figure class=\"aligncenter size-full is-resized\"><img loading=\"lazy\" decoding=\"async\" width=\"626\" height=\"240\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/03\/Software.jpg\" alt=\"\" class=\"wp-image-1513\" style=\"width:1200px;height:190px\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/03\/Software.jpg 626w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/03\/Software-300x115.jpg 300w\" sizes=\"auto, (max-width: 626px) 100vw, 626px\" \/><\/figure>\n<\/div>\n\n<div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-headline so-widget-sow-headline-default-feea9c97c678\"\n\t\t\t\n\t\t><div class=\"sow-headline-container \">\n\t\t\t\t\t\t\t<h1 class=\"sow-headline\">\n\t\t\t\t\t\tHolography package for HyperSpy\t\t\t\t\t\t<\/h1>\n\t\t\t\t\t\t\t\t\t\t\t<div class=\"decoration\">\n\t\t\t\t\t\t<div class=\"decoration-inside\"><\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t\t\t\t<h3 class=\"sow-sub-headline\">\n\t\t\t\t\t\treconstruction and processing of off-axis electron holograms\t\t\t\t\t\t<\/h3>\n\t\t\t\t\t\t<\/div>\n<\/div>\n\n\n<div id=\"wp-block-themeisle-blocks-advanced-columns-27948cc6\" class=\"wp-block-themeisle-blocks-advanced-columns has-1-columns has-desktop-equal-layout has-tablet-equal-layout has-mobile-equal-layout has-vertical-unset has-default-gap\"><div class=\"wp-block-themeisle-blocks-advanced-columns-overlay\"><\/div><div class=\"innerblocks-wrap\">\n<div id=\"wp-block-themeisle-blocks-advanced-column-cf76d8a1\" class=\"wp-block-themeisle-blocks-advanced-column\">\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:80%\">\n<p>\u00a0<\/p>\n<p style=\"text-align: center;\">Processing of off-axis electron holography data of an electrically biased Fe needle using the holography package in Hyperspy. a) Original electron hologram. The inset shows an enlargement of the area outlined by a red square. b) Fourier transform of the hologram, with a sideband used for reconstruction outlined with a red square. c) Unwrapped phase of the reconstructed wave, containing contributions from the mean inner potential of the and both the magnetic field and the electric field of the needle. d) Wrapped phase image showing only the contribution of the electric field. The needle shape is outlined by a dashed black line. The data and experiment are described in Migunov et al. J. Appl. Phys. 117, 134301 (2015).<\/p>\n<p>\u00a0<\/p>\n<h1>\u00a0<\/h1>\n<p style=\"text-align: justify;\">A Python-based software package is available for the basic reconstruction and analysis of off-axis electron holograms for electromagnetic field mapping. This code is part of an open-source software package for the multidimensional data analysis toolbox <strong><a class=\"RichTextExtLink ExternalLink\" title=\"External link\u00a0ER-C (Opens\u00a0new\u00a0window)\" href=\"http:\/\/hyperspy.org\/\" target=\"_blank\" rel=\"noopener\">HyperSpy<\/a><\/strong>, which is distributed under the GPL-3.0 license.<\/p>\n<p>\u00a0<\/p>\n<p style=\"text-align: justify;\">The holography capability in HyperSpy allows parallel reconstruction and processing of multidimensional hologram stacks, denoising of holograms using different algorithms based on (principal) component analysis and flexible input and output of multidimensional data.<\/p>\n\n\n\n<div style=\"height:20px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div class=\"wp-block-buttons is-layout-flex wp-block-buttons-is-layout-flex\">\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-white-color has-text-color has-background wp-element-button\" href=\"https:\/\/iffcloud.fz-juelich.de\/s\/swTztio6Cidq32C\" style=\"background-color:#023d6b\" target=\"_blank\" rel=\"noreferrer noopener\">Download<\/a><\/div>\n<\/div>\n\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div id=\"citationDataDisplay\" class=\"transparent\">\n<div id=\"citationText\" tabindex=\"0\">\n<div>\u00a0<\/div>\n<div class=\"hlFld-ContribAuthor\">\n<div class=\"entryAuthor\" style=\"text-align: justify;\" title=\"authors\"><span class=\"contrib-author\">V. Migunov<i class=\"pubContent-comma\">, <\/i> <\/span><span class=\"contrib-author\"> A. London<i class=\"pubContent-comma\">, <\/i> <\/span><span class=\"contrib-author\"> M. Farle<i class=\"pubContent-comma\">, and <\/i> <\/span><span class=\"contrib-author\"> R. E. Dunin-Borkowski<\/span><span class=\"publicationContentAuthors art_authors\"><span class=\"citation_info\"><span class=\"articleName\">, <\/span><\/span><\/span><\/div>\n<div class=\"entryAuthor\" style=\"text-align: justify;\" title=\"authors\"><span class=\"publicationContentAuthors art_authors\"><span class=\"citation_info\"><span class=\"articleName\">Model-independent measurement of the charge density distribution along an Fe atom probe needle using off-axis electron holography without mean inner potential effects&#8221;<\/span><span class=\"journalName\">, Journal of Applied Physics<\/span> <span class=\"volume\">117<\/span>, 134301 <span class=\"year\"> (2015)<\/span> https:\/\/doi.org\/10.1063\/1.4916609 <\/span><\/span><\/div>\n<\/div>\n<div>\u00a0<\/div>\n<\/div>\n<\/div>\n\n\n\n<div style=\"height:20px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div class=\"wp-block-buttons is-layout-flex wp-block-buttons-is-layout-flex\">\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-white-color has-text-color has-background wp-element-button\" href=\"https:\/\/doi.org\/10.1063\/1.4916609\" style=\"background-color:#023d6b\" target=\"_blank\" rel=\"noreferrer noopener\">View Article<\/a><\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n<\/div>\n<\/div>\n<\/div><\/div>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":2,"featured_media":0,"parent":3885,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_themeisle_gutenberg_block_has_review":false,"footnotes":""},"class_list":["post-3909","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3909","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/comments?post=3909"}],"version-history":[{"count":8,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3909\/revisions"}],"predecessor-version":[{"id":9618,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3909\/revisions\/9618"}],"up":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3885"}],"wp:attachment":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/media?parent=3909"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}