{"id":3499,"date":"2021-05-11T21:07:42","date_gmt":"2021-05-11T21:07:42","guid":{"rendered":"https:\/\/er-c.org\/?page_id=3499"},"modified":"2021-05-12T19:07:02","modified_gmt":"2021-05-12T19:07:02","slug":"dr-probe-examples-gui-watch","status":"publish","type":"page","link":"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-gui\/dr-probe-examples-gui-watch\/","title":{"rendered":"Dr. Probe Examples GUI Watch"},"content":{"rendered":"\n\n<div id=\"wp-block-themeisle-blocks-slider-0c9de452\" class=\"wp-block-themeisle-blocks-slider glide\" data-per-view=\"1\" data-gap=\"0\" data-peek=\"0\" data-autoplay=\"4000\" data-height=\"300px\" data-hide-arrows=\"false\"><div class=\"glide__track\" data-glide-el=\"track\"><div class=\"glide__slides\"><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_001.png\" alt=\"\" title=\"\" data-id=\"2358\"\/><\/figure><\/div><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_002.png\" alt=\"\" title=\"\" data-id=\"2359\"\/><\/figure><\/div><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_003.png\" alt=\"\" title=\"\" data-id=\"2360\"\/><\/figure><\/div><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_004.png\" alt=\"\" title=\"\" data-id=\"2361\"\/><\/figure><\/div><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_005.png\" alt=\"\" title=\"\" data-id=\"2362\"\/><\/figure><\/div><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_006.png\" alt=\"\" title=\"\" data-id=\"2363\"\/><\/figure><\/div><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_007.png\" alt=\"\" title=\"\" data-id=\"2364\"\/><\/figure><\/div><\/div><div class=\"glide__bullets\" data-glide-el=\"controls[nav]\"><button class=\"glide__bullet\" data-glide-dir=\"=0\"><\/button><button class=\"glide__bullet\" data-glide-dir=\"=1\"><\/button><button class=\"glide__bullet\" data-glide-dir=\"=2\"><\/button><button class=\"glide__bullet\" data-glide-dir=\"=3\"><\/button><button class=\"glide__bullet\" data-glide-dir=\"=4\"><\/button><button class=\"glide__bullet\" data-glide-dir=\"=5\"><\/button><button class=\"glide__bullet\" data-glide-dir=\"=6\"><\/button><\/div><\/div><\/div>\n\n\n\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-headline so-widget-sow-headline-default-feea9c97c678\"\n\t\t\t\n\t\t><div class=\"sow-headline-container \">\n\t\t\t\t\t\t\t<h1 class=\"sow-headline\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/\" >\n\t\t\t\t\t\t\t\tDr. Probe<\/a>\t\t\t\t\t\t<\/h1>\n\t\t\t\t\t\t\t\t\t\t\t<div class=\"decoration\">\n\t\t\t\t\t\t<div class=\"decoration-inside\"><\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t\t\t\t<h3 class=\"sow-sub-headline\">\n\t\t\t\t\t\tHR(S)TEM image simulation package\t\t\t\t\t\t<\/h3>\n\t\t\t\t\t\t<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-themeisle-blocks-advanced-columns has-1-columns has-desktop-equal-layout has-tablet-equal-layout has-mobile-equal-layout has-default-gap has-vertical-unset\" id=\"wp-block-themeisle-blocks-advanced-columns-27948cc6\"><div class=\"wp-block-themeisle-blocks-advanced-columns-overlay\"><\/div><div class=\"innerblocks-wrap\">\n<div class=\"wp-block-themeisle-blocks-advanced-column\" id=\"wp-block-themeisle-blocks-advanced-column-cf76d8a1\">\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:80%\">\n<div class=\"wp-block-buttons is-content-justification-center is-layout-flex wp-block-buttons-is-layout-flex\">\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-background\" href=\"https:\/\/er-c.org\/index.php\/software\/open-source-in-house-solutions\/dr-probe\/dr-probe-download\/\" style=\"background-color:#023d6b\">Download<\/a><\/div>\n\n\n\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-background\" href=\"https:\/\/er-c.org\/index.php\/software\/open-source-in-house-solutions\/dr-probe\/dr-probe-installation\/\" style=\"background-color:#023d6b\">Installation<\/a><\/div>\n\n\n\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-background\" href=\"https:\/\/er-c.org\/index.php\/software\/open-source-in-house-solutions\/dr-probe\/dr-probe-registration\/\" style=\"background-color:#023d6b\">Registration<\/a><\/div>\n\n\n\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-background\" href=\"https:\/\/er-c.org\/index.php\/software\/open-source-in-house-solutions\/dr-probe\/dr-probe-documentation\/\" style=\"background-color:#023d6b\">Documentation<\/a><\/div>\n\n\n\n<div class=\"wp-block-button is-style-outline is-style-outline--1\"><a class=\"wp-block-button__link has-white-background-color has-background\" href=\"https:\/\/er-c.org\/index.php\/software\/open-source-in-house-solutions\/dr-probe\/dr-probe-examples\/\">Examples<\/a><\/div>\n\n\n\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-background\" href=\"https:\/\/er-c.org\/index.php\/software\/open-source-in-house-solutions\/dr-probe\/dr-probe-development\/\" style=\"background-color:#023d6b\">Development<\/a><\/div>\n<\/div>\n\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n<div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-features so-widget-sow-features-default-51eddc7803e1\"\n\t\t\t\n\t\t><ul\n\tclass=\"sow-features-list\n\tsow-features-responsive\">\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(25% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-round\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"Structure model creation and manipulation\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-reation\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-fontawesome sow-far\" data-sow-icon=\"&#xf185;\"\n\t\tstyle=\"font-size: 30px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-reation\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tStructure model creation and manipulation\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(25% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-round\"\n\t\t\t\tstyle=\"color: #eb5f73; \"\n\t\t\t\ttitle=\"Simulations with the Dr. Probe GUI\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-gui\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-ionicons\" data-sow-icon=\"&#xf35c;\"\n\t\tstyle=\"font-size: 30px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-gui\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tSimulations with the Dr. Probe GUI\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(25% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-round\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"Simulations with the Dr. Probe command-line tools\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-cl\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-ionicons\" data-sow-icon=\"&#xf394;\"\n\t\tstyle=\"font-size: 30px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-cl\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tSimulations with the Dr. Probe command-line tools\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(25% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-round\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"Publications\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-publications\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-fontawesome sow-far\" data-sow-icon=\"&#xf0c5;\"\n\t\tstyle=\"font-size: 30px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-publications\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tPublications\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t<\/ul>\n<\/div>\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<hr>\n&nbsp;\n<p class=\"sub1\" style=\"text-align: center;\">We will simulate the propagation of an electron probe through cubic perovskite SrTiO<sub>3<\/sub> in [001] orientation using the <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/\">Dr. Probe GUI<\/a><\/strong>.<\/p>\n<p class=\"sub1\" style=\"text-align: center;\">The example builds up on the example for simulating STEM images. Since we will skip detailed explanations and a few steps of the setup in the present example it could be worth to <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-gui\/dr-probe-examples-gui-simulate\/\">read the previous example<\/a><\/strong>.<\/p>\n\n&nbsp;\n<hr>\n\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n<div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-features so-widget-sow-features-default-7972f72d0523\"\n\t\t\t\n\t\t><ul\n\tclass=\"sow-features-list\n\tsow-features-responsive\">\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(33.333% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-square\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"Simulate bright-field and HAADF STEM images of SrTiO3\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-gui\/dr-probe-examples-gui-simulate\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-fontawesome sow-far\" data-sow-icon=\"&#xf044;\"\n\t\tstyle=\"font-size: 20px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-gui\/dr-probe-examples-gui-simulate\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tSimulate bright-field and HAADF STEM images of SrTiO3\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(33.333% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-square\"\n\t\t\t\tstyle=\"color: #eb5f73; \"\n\t\t\t\ttitle=\"Watch how an electron probe propagates through SrTiO3\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-gui\/dr-probe-examples-gui-watch\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-fontawesome sow-far\" data-sow-icon=\"&#xf044;\"\n\t\tstyle=\"font-size: 20px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-gui\/dr-probe-examples-gui-watch\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tWatch how an electron probe propagates through SrTiO3\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(33.333% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-square\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"Calculate CBED patterns of a thin iron crystal\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-gui\/dr-probe-examples-gui-calculate\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-fontawesome sow-far\" data-sow-icon=\"&#xf044;\"\n\t\tstyle=\"font-size: 20px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-examples\/dr-probe-examples-gui\/dr-probe-examples-gui-calculate\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tCalculate CBED patterns of a thin iron crystal\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t<\/ul>\n<\/div>\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div class=\"wp-block-columns has-background is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\" style=\"background-color:#ebebeb\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:45%\">\n<h5 class=\"h1\" style=\"text-align: left;\">Quick guide to probe propagation simulations<\/h5>\n&nbsp;\n<p style=\"text-align: justify;\">1. choose the GPU and the number of CPUs to be used (<strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-preferences\/\">program preferences<\/a><\/strong>)<\/p>\n\n&nbsp;\n<p style=\"text-align: justify;\">2. set the relevant <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-instrument\/\">microscope parameters<\/a><\/strong><\/p>\n\n&nbsp;\n<p style=\"text-align: left;\">&nbsp;&nbsp;&nbsp;&nbsp; 2a) accelerating voltage<\/p>\n<p style=\"text-align: left;\">&nbsp;&nbsp;&nbsp;&nbsp; 2b) illumination aperture radius<\/p>\n<p style=\"text-align: left;\">&nbsp;&nbsp;&nbsp;&nbsp; 2c) effective source profile and width<\/p>\n<p style=\"text-align: left;\">&nbsp;&nbsp;&nbsp;&nbsp; 2d) probe aberrations<\/p>\n<p style=\"text-align: left;\">&nbsp;&nbsp;&nbsp;&nbsp; 2e) define an auxiliary <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-instrument\/\">detector<\/a><\/strong> to set the maximum diffraction angle \u03d1<sub>max<\/sub><\/p>\n\n&nbsp;\n<p style=\"text-align: left;\">3. prepare object transmission functions (<a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-sample\/\"><strong>setup sample<\/strong><\/a>)<\/p>\n\n&nbsp;\n<p style=\"text-align: left;\">&nbsp;&nbsp;&nbsp;&nbsp; 3a) load the structure model<\/p>\n<p style=\"text-align: left;\">&nbsp; &nbsp;&nbsp; 3b) <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-sample\/\">modify<\/a><\/strong> the model, reorient &amp; increase size, shift atoms to center of slices<\/p>\n<p style=\"text-align: left;\">&nbsp;&nbsp;&nbsp;&nbsp; 3c) choose number of samples for the simulation grid sufficient to include \u03d1<sub>max<\/sub><\/p>\n<p style=\"text-align: left;\">&nbsp;&nbsp;&nbsp;&nbsp; 3d) choose the number of slices matching the number of atomic planes<\/p>\n<p style=\"text-align: left;\">&nbsp;&nbsp;&nbsp;&nbsp; 3e) check the frozen-lattice generation and set the number of variants<\/p>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:45%\">\n<p style=\"text-align: left;\">4.&nbsp;<strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-sample\/\">stack<\/a><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-sample\/\"> slices<\/a><\/strong> periodically to maximum sample thickness<\/p>\n\n&nbsp;\n<p style=\"text-align: left;\">5. prepare the <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-calculations\/\">calculation<\/a><\/strong><\/p>\n\n&nbsp;\n<p style=\"text-align: left;\">&nbsp;&nbsp;&nbsp;&nbsp; 5a) set sample tilt, thickness step size for readout, and number of repeats per scan position<\/p>\n<p style=\"text-align: left;\">&nbsp;&nbsp;&nbsp;&nbsp; 5b) include partial coherence by simulating focus spread and source size<\/p>\n<p style=\"text-align: left;\">&nbsp;&nbsp;&nbsp;&nbsp; 5c) define a probe position by the <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-calculations\/\">scan frame<\/a><\/strong> offset<\/p>\n\n&nbsp;\n<p style=\"text-align: left;\">6. choose <i>Probe propagation &amp; CBED<\/i> as calculation type<\/p>\n\n&nbsp;\n<p style=\"text-align: left;\">7. check that the maximum thickness slider is set to the right value<\/p>\n\n&nbsp;\n<p style=\"text-align: left;\">8. run the multislice calculations<\/p>\n\n&nbsp;\n<p style=\"text-align: left;\">9. view <i>probe intensity (r)<\/i> and <i>CBED pattern (k)<\/i> depending on sample thickness<\/p>\n\n&nbsp;\n<p style=\"text-align: left;\">10. save the results<\/p>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-3719\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.MicroscopeSetup-300x215.png\" alt=\"\" width=\"500\" height=\"359\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.MicroscopeSetup-300x215.png 300w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.MicroscopeSetup-768x552.png 768w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.MicroscopeSetup.png 880w\" sizes=\"auto, (max-width: 500px) 100vw, 500px\" \/>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<h5 class=\"h1\" style=\"text-align: left;\">Loading previously saved program parameters and sample structure<\/h5>\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">In order to make sure that the parameters and appearance of the user interface is similar to this documentation, please download the<\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: left;\"><a class=\"button\" href=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.Setup.zip\"><strong>Example Setup<\/strong><\/a> \u2003 (file <code>Example02.Setup.zip<\/code>)<\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">The archive contains a setup file <code>Example02.UISetup.prm<\/code> for the graphical user interface with all parameters pre-set and a structure model <code>SrTiO3_8x8.cif<\/code> which we will use for this simulation.<\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">Extract the files from the ZIP archive and load the setup <code>Example02.UISetup.prm<\/code> using the <i>File \/ Load Parameters &#8230;<\/i> menu.<\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">Check the program preferences from the menu <i>Setup \/ Preferences<\/i> and select the number of CPUs and the GPU if available on your system. Use not all of the available CPUs. Leave 1 or 2 CPUs to handle the system and calculation manager thread.<\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">Take a look at the <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-instrument\/\">microscope setup<\/a><\/strong>. You will find the setup for an aberration corrected 300 kV STEM. The source distribution is set to Lorentz type and an auxiliary detector is defined for the range of diffraction angles up to 150 mrad. This will help us to setup the sampling of the simulation grid.<\/p>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns has-background is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\" style=\"background-color:#ebebeb\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<h5 class=\"h1\" style=\"text-align: left;\">Preparing object transmission functions<\/h5>\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">Open the <a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-sample\/\">sample setup<\/a> on the <i>Slice creation<\/i> page and select the super-cell file <code>SrTiO3_8x8.cif<\/code> you have downloaded before. You may take a look at the structure, but there is no need to change it for this simulation.<\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">The super-cell contains 8 \u00d7 8 \u00d7 1 unit cells. Using larger super-cells is beneficial for <i>probe propagation &amp; CBED<\/i> simulations allowing the probe to spread in a large simulation box without significant periodic wrap-around also for larger sample thickness. Larger cell sizes allow us also to calculate smaller spatial frequencies (smaller diffraction angles), which provides a better resolution of diffraction patterns in the bright-field regime.<\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">Select the <i>Equidistant<\/i> slicing scheme from the drop-down list and push the button [<i>Suggest Sufficient Sampling<\/i>]. The program sets the sampling of the super-cell to 729 \u00d7 729 pixels and 2 slices. This sampling is sufficient to calculate up to 150 mrad diffraction angles with 300 keV electrons.<\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">Activate the generation of <i>Frozen-lattice configurations<\/i> and set the number of variants to 100. The slices will occupy about 850 MB computer memory. Start the calculation of phase gratings and wait until it is finished.<\/p>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-3720\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.SampleSetup.SliceCreation-300x241.png\" alt=\"\" width=\"400\" height=\"321\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.SampleSetup.SliceCreation-300x241.png 300w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.SampleSetup.SliceCreation.png 674w\" sizes=\"auto, (max-width: 400px) 100vw, 400px\" \/>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns has-background is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\" style=\"background-color:#ebebeb\">\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-3721\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.SampleSetup.SliceData-300x241.png\" alt=\"\" width=\"400\" height=\"321\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.SampleSetup.SliceData-300x241.png 300w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.SampleSetup.SliceData.png 674w\" sizes=\"auto, (max-width: 400px) 100vw, 400px\" \/>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<p style=\"text-align: justify;\">Switch to the page <i>Slice Data Setup<\/i> and set the maximum sample thickness to 50 nm by clicking on the button [<i>Set<\/i>]. This will stack the 2 phase gratings in a periodic sequence of 256 sample slices.<\/p>\n\n&nbsp;\n<p style=\"text-align: justify;\">Leave the <i>sample setup<\/i> dialog with the [<i>OK<\/i>] button and make sure that the maximum thickness slider in the main dialog is set to the rightmost position (49.93 nm thickness, slice #255).<\/p>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<h5 class=\"h1\" style=\"text-align: left;\">Preparing the calculation<\/h5>\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">The calculation parameters should already be set up by the previous loading of the GUI setup. You may check it again in the <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-calculations\/\">calculation setup<\/a><\/strong> by comparing to the images on the right.<\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">We will simulate probe images for each slice by setting the <i>sample thickness steps<\/i> to 1.<\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">Using 200 <i>repeats per scan position<\/i> provides sufficient averaging over random frozen-lattice, focus-spread, and source point variations applied with repeated multislice calculations.<\/p>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-3722\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.CalculationSetup.General-300x245.png\" alt=\"\" width=\"400\" height=\"327\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.CalculationSetup.General-300x245.png 300w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.CalculationSetup.General.png 520w\" sizes=\"auto, (max-width: 400px) 100vw, 400px\" \/>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-3723\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.CalculationSetup.Scan-300x245.png\" alt=\"\" width=\"400\" height=\"327\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.CalculationSetup.Scan-300x245.png 300w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.CalculationSetup.Scan.png 520w\" sizes=\"auto, (max-width: 400px) 100vw, 400px\" \/>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<p class=\"sub1\" style=\"text-align: justify;\">The beam position selected by the <i>scan frame offset<\/i> corresponds to a point just next to a titanium-oxygen column in the center of the calculation frame. Feel free to change it when repeating the simulation.<\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">Close the <i>calculation setup<\/i> dialog by pressing the [<i>OK<\/i>] button.<\/p>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns has-background is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\" style=\"background-color:#ebebeb\">\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<h5 class=\"h1\" style=\"text-align: left;\">Running the simulations<\/h5>\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">Choose <i>Probe propagation &amp; CBED<\/i> from the drop-down list of calculation types and push the button [<i>Start Calculation &#8230;<\/i>].<\/p>\n\n&nbsp;\n<p style=\"text-align: justify;\">The result type <i>Probe intensity (r)<\/i> shows the probe intensity distribution at maximum sample thickness. The integration over random frozen-lattice, defocus, and source point variations is updating during the calculation. The total calculation time depends on your hardware. It took less than 3 minutes using 6 CPU threads of an Intel\u00ae Core\u2122 i7 with together with a NVIDIA\u00ae Quadro\u00ae M4000 GPU.<\/p>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-3728\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.RunningCalculation-1-300x150.png\" alt=\"\" width=\"500\" height=\"250\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.RunningCalculation-1-300x150.png 300w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.RunningCalculation-1.png 664w\" sizes=\"auto, (max-width: 500px) 100vw, 500px\" \/>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns has-background is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\" style=\"background-color:#ebebeb\">\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<figure class=\"wp-block-image size-large is-resized is-style-default\"><img loading=\"lazy\" decoding=\"async\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.ResultsAnimated-1.gif\" alt=\"\" class=\"wp-image-3734\" width=\"392\" height=\"200\"\/><figcaption>animation created with <strong><a rel=\"noreferrer noopener\" href=\"http:\/\/www.wolfram.com\/mathematica\/\" target=\"_blank\">Wolfram Mathematica<\/a><\/strong> 11.3<\/figcaption><\/figure>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<p style=\"text-align: justify;\">Use the sample thickness slider to see how the probe intensity gets attracted to the Ti-O column and oscillates around it with increasing sample thickness. Significant parts of the probe spread through the crystal filling almost the full simulation box of about 3 nm \u00d7 3 nm at 50 nm sample thickness.<\/p>\n\n&nbsp;\n<p style=\"text-align: justify;\">Oscillations can also be observed in the CBED patterns, which have been stored as separate result type.<\/p>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<h5 class=\"h1\" style=\"text-align: left;\">Saving simulation results<\/h5>\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">There are different ways for saving the current simulation results to files. The most convenient way is using the button [<i>Save Results to File &#8230;<\/i>]. The other way is using the [<em>Save<\/em>] button of the results display.<\/p>\n\n&nbsp;\n<p style=\"text-align: justify;\">The dialog for controlling the saving of results to files is shown in the image above and denotes information regarding the currently selected result in the upper part. It lets you setup file saving options in the lower part.<\/p>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-medium wp-image-3730\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.SaveResults-300x300.png\" alt=\"\" width=\"300\" height=\"300\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.SaveResults-300x300.png 300w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.SaveResults-150x150.png 150w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.SaveResults.png 485w\" sizes=\"auto, (max-width: 300px) 100vw, 300px\" \/>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n\n\n\n\n<img loading=\"lazy\" decoding=\"async\" class=\"alignnone wp-image-3731\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.Results.Proj-XZ-300x106.png\" alt=\"\" width=\"400\" height=\"141\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.Results.Proj-XZ-300x106.png 300w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/Example02.Results.Proj-XZ.png 729w\" sizes=\"auto, (max-width: 400px) 100vw, 400px\" \/>\n<p style=\"text-align: center;\">image created with the <strong><a href=\"http:\/\/www.gatan.com\/products\/tem-analysis\/gatan-microscopy-suite-software\" target=\"_blank\" rel=\"noopener\">Gatan Microscopy Suite\u00ae<\/a> <\/strong>3.21<\/p>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<p style=\"text-align: justify;\">For the current example, choose an appropriate destination folder (<i>disk path<\/i>) on your hard drive and enter a file name prefix (<i>file title<\/i>). Choose the MRC data file format and mark the two check boxes for saving all images of the thickness series at once. Press the [<i>Write Files<\/i>] button to initiate the saving procedure. A large MRC file should now be saved an can be loaded and displayed again, e.g. using <strong><a href=\"http:\/\/www.gatan.com\/products\/tem-analysis\/gatan-microscopy-suite-software\" target=\"_blank\" rel=\"noopener\">Gatan Microscopy Suite\u00ae<\/a><\/strong> (GMS2+) by dropping the file into the application window.<\/p>\n\n&nbsp;\n<p style=\"text-align: justify;\">You may then inspect the probe intensity distribution from different perspectives, such as the <i>x-z<\/i> projection shown above. There you can see the oscillation of the electron probe between two sides of the TiO atom column over 50 nm sample thickness.<\/p>\n<\/div>\n<\/div>\n\n\n\n\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n<\/div>\n<\/div>\n<\/div><\/div>\n\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":2,"featured_media":0,"parent":3285,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"templates\/builder-fullwidth-std.php","meta":{"_themeisle_gutenberg_block_has_review":false,"footnotes":""},"class_list":["post-3499","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3499","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/comments?post=3499"}],"version-history":[{"count":20,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3499\/revisions"}],"predecessor-version":[{"id":3750,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3499\/revisions\/3750"}],"up":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3285"}],"wp:attachment":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/media?parent=3499"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}