{"id":3084,"date":"2021-05-10T08:29:06","date_gmt":"2021-05-10T08:29:06","guid":{"rendered":"https:\/\/er-c.org\/?page_id=3084"},"modified":"2021-05-11T18:51:47","modified_gmt":"2021-05-11T18:51:47","slug":"dr-probe-documentation-msa-control-files","status":"publish","type":"page","link":"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-msa\/dr-probe-documentation-msa-control-files\/","title":{"rendered":"Dr. Probe Documentation MSA Control Files"},"content":{"rendered":"\n\n<div id=\"wp-block-themeisle-blocks-slider-0c9de452\" class=\"wp-block-themeisle-blocks-slider glide\" data-per-view=\"1\" data-gap=\"0\" data-peek=\"0\" data-autoplay=\"4000\" data-height=\"300px\" data-hide-arrows=\"false\"><div class=\"glide__track\" data-glide-el=\"track\"><div class=\"glide__slides\"><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_001.png\" alt=\"\" title=\"\" data-id=\"2358\"\/><\/figure><\/div><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_002.png\" alt=\"\" title=\"\" data-id=\"2359\"\/><\/figure><\/div><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_003.png\" alt=\"\" title=\"\" data-id=\"2360\"\/><\/figure><\/div><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_004.png\" alt=\"\" title=\"\" data-id=\"2361\"\/><\/figure><\/div><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_005.png\" alt=\"\" title=\"\" data-id=\"2362\"\/><\/figure><\/div><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_006.png\" alt=\"\" title=\"\" data-id=\"2363\"\/><\/figure><\/div><div class=\"wp-block-themeisle-blocks-slider-item-wrapper glide__slide\" tabindex=\"0\"><figure><img decoding=\"async\" class=\"wp-block-themeisle-blocks-slider-item\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe-teas_007.png\" alt=\"\" title=\"\" data-id=\"2364\"\/><\/figure><\/div><\/div><div class=\"glide__bullets\" data-glide-el=\"controls[nav]\"><button class=\"glide__bullet\" data-glide-dir=\"=0\"><\/button><button class=\"glide__bullet\" data-glide-dir=\"=1\"><\/button><button class=\"glide__bullet\" data-glide-dir=\"=2\"><\/button><button class=\"glide__bullet\" data-glide-dir=\"=3\"><\/button><button class=\"glide__bullet\" data-glide-dir=\"=4\"><\/button><button class=\"glide__bullet\" data-glide-dir=\"=5\"><\/button><button class=\"glide__bullet\" data-glide-dir=\"=6\"><\/button><\/div><\/div><\/div>\n\n\n\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-headline so-widget-sow-headline-default-feea9c97c678\"\n\t\t\t\n\t\t><div class=\"sow-headline-container \">\n\t\t\t\t\t\t\t<h1 class=\"sow-headline\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/\" >\n\t\t\t\t\t\t\t\tDr. Probe<\/a>\t\t\t\t\t\t<\/h1>\n\t\t\t\t\t\t\t\t\t\t\t<div class=\"decoration\">\n\t\t\t\t\t\t<div class=\"decoration-inside\"><\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t\t\t\t<h3 class=\"sow-sub-headline\">\n\t\t\t\t\t\tHR(S)TEM image simulation package\t\t\t\t\t\t<\/h3>\n\t\t\t\t\t\t<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-themeisle-blocks-advanced-columns has-1-columns has-desktop-equal-layout has-tablet-equal-layout has-mobile-equal-layout has-default-gap has-vertical-unset\" id=\"wp-block-themeisle-blocks-advanced-columns-27948cc6\"><div class=\"wp-block-themeisle-blocks-advanced-columns-overlay\"><\/div><div class=\"innerblocks-wrap\">\n<div class=\"wp-block-themeisle-blocks-advanced-column\" id=\"wp-block-themeisle-blocks-advanced-column-cf76d8a1\">\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:80%\">\n<div class=\"wp-block-buttons is-content-justification-center is-layout-flex wp-block-buttons-is-layout-flex\">\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-background\" href=\"https:\/\/er-c.org\/index.php\/software\/open-source-in-house-solutions\/dr-probe\/dr-probe-download\/\" style=\"background-color:#023d6b\">Download<\/a><\/div>\n\n\n\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-background\" href=\"https:\/\/er-c.org\/index.php\/software\/open-source-in-house-solutions\/dr-probe\/dr-probe-installation\/\" style=\"background-color:#023d6b\">Installation<\/a><\/div>\n\n\n\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-background\" href=\"https:\/\/er-c.org\/index.php\/software\/open-source-in-house-solutions\/dr-probe\/dr-probe-registration\/\" style=\"background-color:#023d6b\">Registration<\/a><\/div>\n\n\n\n<div class=\"wp-block-button is-style-outline is-style-outline--1\"><a class=\"wp-block-button__link has-white-background-color has-background\" href=\"https:\/\/er-c.org\/index.php\/software\/open-source-in-house-solutions\/dr-probe\/dr-probe-documentation\/\">Documentation<\/a><\/div>\n\n\n\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-background\" href=\"https:\/\/er-c.org\/index.php\/software\/open-source-in-house-solutions\/dr-probe\/dr-probe-examples\/\" style=\"background-color:#023d6b\">Examples<\/a><\/div>\n\n\n\n<div class=\"wp-block-button is-style-fill\"><a class=\"wp-block-button__link has-background\" href=\"https:\/\/er-c.org\/index.php\/software\/open-source-in-house-solutions\/dr-probe\/dr-probe-development\/\" style=\"background-color:#023d6b\">Development<\/a><\/div>\n<\/div>\n\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n<div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-features so-widget-sow-features-default-da11e84927f7\"\n\t\t\t\n\t\t><ul\n\tclass=\"sow-features-list\n\tsow-features-responsive\">\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(16.667% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-round\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"GUI\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-ionicons\" data-sow-icon=\"&#xf35c;\"\n\t\tstyle=\"font-size: 30px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tGUI\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(16.667% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-round\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"CELSLC\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-celslc\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-ionicons\" data-sow-icon=\"&#xf394;\"\n\t\tstyle=\"font-size: 30px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-celslc\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tCELSLC\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(16.667% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-round\"\n\t\t\t\tstyle=\"color: #eb5f73; \"\n\t\t\t\ttitle=\"MSA\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-msa\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-ionicons\" data-sow-icon=\"&#xf394;\"\n\t\tstyle=\"font-size: 30px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-msa\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tMSA\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(16.667% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-round\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"WAVIMG\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-wavimg\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-ionicons\" data-sow-icon=\"&#xf394;\"\n\t\tstyle=\"font-size: 30px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-wavimg\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tWAVIMG\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(16.667% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-round\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"BuildCell\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-buildcell\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-ionicons\" data-sow-icon=\"&#xf394;\"\n\t\tstyle=\"font-size: 30px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-buildcell\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tBuildCell\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(16.667% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-round\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"CellMuncher\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-cellmuncher\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-ionicons\" data-sow-icon=\"&#xf394;\"\n\t\tstyle=\"font-size: 30px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-cellmuncher\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tCellMuncher\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t<\/ul>\n<\/div>\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n<\/div>\n<\/div>\n\n\n\n<hr>\n&nbsp;\n<p class=\"sub1\" style=\"text-align: center;\">The program MSA calculates the diffraction of fast electrons in an atomic structure with the multislice algorithm. The results can be complex-valued wave functions, STEM images, CBED patterns, or probe intensity distributions.<\/p>\n\n&nbsp;\n\n&nbsp;\n<hr>\n\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n<div\n\t\t\t\n\t\t\tclass=\"so-widget-sow-features so-widget-sow-features-default-ae469545c495\"\n\t\t\t\n\t\t><ul\n\tclass=\"sow-features-list\n\tsow-features-responsive\">\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(25% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-square\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"Input\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-msa\/dr-probe-documentation-msa-input\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-genericons\" data-sow-icon=\"&#xf412;\"\n\t\tstyle=\"font-size: 20px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-msa\/dr-probe-documentation-msa-input\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tInput\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(25% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-square\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"Output\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-msa\/dr-probe-documentation-msa-output\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-genericons\" data-sow-icon=\"&#xf412;\"\n\t\tstyle=\"font-size: 20px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-msa\/dr-probe-documentation-msa-output\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tOutput\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(25% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-square\"\n\t\t\t\tstyle=\"color: #eb5f73; \"\n\t\t\t\ttitle=\"Control Files\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-msa\/dr-probe-documentation-msa-control-files\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-genericons\" data-sow-icon=\"&#xf412;\"\n\t\tstyle=\"font-size: 20px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-msa\/dr-probe-documentation-msa-control-files\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tControl Files\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t\t\t<li\n\t\t\tclass=\"sow-features-feature sow-icon-container-position-top\"\n\t\t\tstyle=\"display: flex; flex-direction: column; width: calc(25% - 25px);\"\n\t\t>\n\t\t\t\n\t\t\t\t\t\t<a\t\t\t\tclass=\"sow-icon-container sow-container-square\"\n\t\t\t\tstyle=\"color: #023d6b; \"\n\t\t\t\ttitle=\"Options\"\n\t\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-msa\/dr-probe-documentation-msa-options\/\"\n\t\t\t\t\t\t\t\t>\n\t\t\t\t<span class=\"sow-icon-genericons\" data-sow-icon=\"&#xf412;\"\n\t\tstyle=\"font-size: 20px; color: #FFFFFF\" \n\t\taria-hidden=\"true\"><\/span>\t\t\t<\/a>\n\n\t\t\t<div class=\"textwidget\">\n\t\t\t\t\n\t\t\t\t\t\t\t\t\t<h6 class=\"sow-features-feature-title\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t<a\n\t\t\t\t\t\t\t\thref=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-msa\/dr-probe-documentation-msa-options\/\"\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t>\n\t\t\t\t\t\t\tOptions\t\t\t\t\t\t\t<\/a>\n\t\t\t\t\t\t\t\t\t\t\t\t<\/h6>\n\t\t\t\t\n\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/li>\n\n\t<\/ul>\n<\/div>\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-9d6595d7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:60%\">\n<table class=\"sub1\" style=\"width: 100%; height: 4313px;\">\n<thead>\n<tr style=\"height: 66px; background-color: #023d6b;\">\n<th class=\"tabhead\" style=\"width: 50px; height: 66px; text-align: center;\"><span style=\"color: #ffffff;\"><strong>Line<\/strong><\/span><\/th>\n<th class=\"tabhead\" style=\"width: 100px; height: 66px; text-align: center;\"><span style=\"color: #ffffff;\"><strong>Parameters<\/strong><\/span><\/th>\n<th class=\"tabhead\" style=\"width: 250px; height: 66px; text-align: justify;\"><span style=\"color: #ffffff;\"><strong>Description (Version 0.62+)<\/strong><\/span><\/th>\n<\/tr>\n<\/thead>\n<tbody>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 45px;\"><span style=\"color: #023d6b;\">01<\/span><\/td>\n<td style=\"width: 11.1588%; height: 45px;\"><span style=\"color: #023d6b;\">&lt;string&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 45px; text-align: justify;\"><span style=\"color: #023d6b;\">Parameter block name, must be &#8216;[Microscope Parameters]&#8217;<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 338px;\"><span style=\"color: #023d6b;\">02<\/span><\/td>\n<td style=\"width: 11.1588%; height: 338px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 338px; text-align: justify;\"><span style=\"color: #023d6b;\">STEM probe forming aperture, radius [mrad], e.g. <code>25<\/code><\/span><br><span style=\"color: #023d6b;\">The line supports up to 4 numbers as input where the second number defines the relative asymmetry of an elliptical aperture, the third number defines the orientation of the asymmetry axis in radians, and the fourth number defines the relative smoothness of the aperture edge.<\/span><br><span style=\"color: #023d6b;\">Example: <code>25., 0.026, 0.34, 0.038<\/code>, defines an aperture of 25 mrad mean radius with 2.6% asymmetry along 0.34 rad and 3.8% edge smoothness.<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 46px;\"><span style=\"color: #023d6b;\">03<\/span><\/td>\n<td style=\"width: 11.1588%; height: 46px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 46px; text-align: justify;\"><span style=\"color: #023d6b;\">Inner radius of an annular diffraction detector [mrad], e.g. <code>80<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 46px;\"><span style=\"color: #023d6b;\">04<\/span><\/td>\n<td style=\"width: 11.1588%; height: 46px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 46px; text-align: justify;\"><span style=\"color: #023d6b;\">Outer radius of an annular diffraction detector [mrad], e.g. <code>250<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 171px;\"><span style=\"color: #023d6b;\">05<\/span><\/td>\n<td style=\"width: 11.1588%; height: 171px;\"><span style=\"color: #023d6b;\">&lt;number&gt; &lt;string&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 171px; text-align: justify;\"><span style=\"color: #023d6b;\">Detector file usage, set the number to 0 for switching off (the annular detector defined in lines 3 and 4 will be used). Set the switch to 1 for using a detector parameter file and provide the file name with the string parameter.<\/span><br><span style=\"color: #023d6b;\">Example: <code>1, 'detectors.prm'<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 46px;\"><span style=\"color: #023d6b;\">06<\/span><\/td>\n<td style=\"width: 11.1588%; height: 46px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 46px; text-align: justify;\"><span style=\"color: #023d6b;\">Probe electron wavelength [nm] or kinetic energy [keV], e.g. <code>0.001969<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 46px;\"><span style=\"color: #023d6b;\">07<\/span><\/td>\n<td style=\"width: 11.1588%; height: 46px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 46px; text-align: justify;\"><span style=\"color: #023d6b;\">Effective source radius (HWHM) [nm] (STEM only), e.g. <code>0.055<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 46px;\"><span style=\"color: #023d6b;\">08<\/span><\/td>\n<td style=\"width: 11.1588%; height: 46px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 46px; text-align: justify;\"><span style=\"color: #023d6b;\">Effective focus spread (1\/e half-width) [nm] (STEM only), e.g. <code>1.5<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 67px;\"><span style=\"color: #023d6b;\">09<\/span><\/td>\n<td style=\"width: 11.1588%; height: 67px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 67px; text-align: justify;\"><span style=\"color: #023d6b;\">Focus-spread kernel width (relative to focus-spread) (STEM only), e.g. <code>2.0<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 66px;\"><span style=\"color: #023d6b;\">10<\/span><\/td>\n<td style=\"width: 11.1588%; height: 66px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 66px; text-align: justify;\"><span style=\"color: #023d6b;\">Number of focal kernel steps (STEM only), e.g. <code>7<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 66px;\"><span style=\"color: #023d6b;\">11<\/span><\/td>\n<td style=\"width: 11.1588%; height: 66px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 66px; text-align: justify;\"><span style=\"color: #023d6b;\">Number <em>N<\/em><sub>abr<\/sub> of aberration coefficients set below, e.g. <code>3<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 324px;\"><span style=\"color: #023d6b;\">11 +<\/span><\/td>\n<td style=\"width: 11.1588%; height: 324px;\"><span style=\"color: #023d6b;\">&lt;number&gt; &lt;float&gt; &lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 324px; text-align: justify;\"><span style=\"color: #023d6b;\">Aberration definition, index number and two coefficient values [nm] (details see right)<\/span><br><span style=\"color: #023d6b;\"><em>N<\/em><sub>abr<\/sub> aberration definitions are expected following line 11. By default, aberration coefficient values are all zero. You may set <em>N<\/em><sub>abr<\/sub> = 0 and leave out all aberration definitions. <\/span><br><br><span style=\"color: #023d6b;\">Note that depending on the number of aberration definitions <em>N<\/em><sub>abr<\/sub>, the following content is moved further lines down in the parameter file.<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">12 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;string&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Parameter block name, must be &#8216;[Multislice Parameters]&#8217;<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">13 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Object tilt <em>x<\/em> component [deg], e.g. <code>0.5<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">14 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Object tilt <em>y<\/em> component [deg], e.g. <code>0.0<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">15 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Horizontal scan frame offset in the super-cell [nm], e.g. <code>0.0<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">16 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Vertical scan frame offset in the super-cell [nm], e.g. <code>0.0<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">17 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Horizontal scan frame size [nm], e.g. <code>1.24<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">18 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Vertical scan frame size [nm], e.g. <code>0.785<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">19 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;float&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Scan line (row) rotation with respect to the super-cell <em>x<\/em>-axis [deg], e.g. <code>15<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">20 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Number of scan columns (row length), e.g. <code>124<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">21 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Number of scan rows (column length), e.g. <code>79<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">22 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Switch the explicit focus spread convolution OFF (<code>0<\/code>) or ON (<code>1<\/code>).<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">23 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Switch convolution by a source distribution function OFF (<code>0<\/code>), ON with Gaussian profile (<code>1<\/code>) or with Lorentzian profile (<code>2<\/code>).<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 108px;\"><span style=\"color: #023d6b;\">24 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 108px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 108px; text-align: justify;\"><span style=\"color: #023d6b;\">Super-cell repeat factor along <i>x<\/i>, e.g. <code>1<\/code>.<\/span><br><span style=\"color: #023d6b;\">Values &gt; 1 will increase the size of the wave function and the computation time.<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 108px;\"><span style=\"color: #023d6b;\">25 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 108px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 108px; text-align: justify;\"><span style=\"color: #023d6b;\">Super-cell repeat factor along <i>y<\/i>, e.g. <code>1<\/code>.<\/span><br><span style=\"color: #023d6b;\">Values &gt; 1 will increase the size of the wave function and the computation time.<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">26 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Super-cell repeat factor along <i>z<\/i>, e.g. <code>1<\/code>.<\/span><br><span style=\"color: #023d6b;\">(not used anymore. Set it to 1!)<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 192px;\"><span style=\"color: #023d6b;\">27 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 192px;\"><span style=\"color: #023d6b;\">&lt;string&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 192px; text-align: justify;\"><span style=\"color: #023d6b;\">Slice file name prefix, e.g. <code>'STO001_300kV'<\/code><\/span><br><span style=\"color: #023d6b;\">The program will look for files with this file name extended by <code>'_###.sli'<\/code>, where <code>###<\/code> is a 3 digit number and slice index. If one of the slice files is not found, the program will terminate with an error.<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">28 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\"><em>N<\/em><sub>sf<\/sub> = Number of slice files to be loaded, e.g. <code>4<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 92px;\"><span style=\"color: #023d6b;\">29 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 92px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 92px; text-align: justify;\"><span style=\"color: #023d6b;\">Maximum number of frozen-phonon variants used, e.g. <code>50<\/code><\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 317px;\"><span style=\"color: #023d6b;\">30 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 317px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 317px; text-align: justify;\"><span style=\"color: #023d6b;\">STEM: Minimum number of frozen-phonon configurations to be averaged per scan pixel or CBED pattern, e.g. <code>1<\/code>.<\/span><br><span style=\"color: #023d6b;\">CTEM: Minimum number of frozen-phonon configurations used to generate wave functions, e.g. <code>100<\/code>.<\/span><br><span style=\"color: #023d6b;\">Warning: If wave functions are extracted from the multislice calculation, the number of wave functions that will be generated and stored in separate files is increased accordingly. A wave function file will be written for each applied frozen-phonon configuration.<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 275px;\"><span style=\"color: #023d6b;\">31 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 275px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 275px; text-align: justify;\"><span style=\"color: #023d6b;\">Period of readout or detection in units of slices, e.g. <code>2<\/code>.<\/span><br><span style=\"color: #023d6b;\">This parameter determines the amount of readout during the multislice calculation. It is the sampling of output along the propagation direction and allows thus to generate output representing a sample thickness series. Set this value to zero if you are only interested in output at the maximum sample thickness defined in the line below.<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 173px;\"><span style=\"color: #023d6b;\">32 + <em>N<\/em><sub>abr<\/sub><\/span><\/td>\n<td style=\"width: 11.1588%; height: 173px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 173px; text-align: justify;\"><span style=\"color: #023d6b;\"><em>N<\/em><sub>sl<\/sub> = Number of slices used to describe the full sample up to its maximum thickness, e.g. <code>64<\/code>.<\/span><br><span style=\"color: #023d6b;\">The same number of lines is expected to follow below. This number determines the maximum thickness, corresponding to the sum of applied slice thicknesses.<\/span><\/td>\n<\/tr>\n<tr style=\"background-color: #ebebeb;\">\n<td style=\"width: 8.15451%; height: 387px;\"><span style=\"color: #023d6b;\">32 + <em>N<\/em><sub>abr<\/sub> +<\/span><\/td>\n<td style=\"width: 11.1588%; height: 387px;\"><span style=\"color: #023d6b;\">&lt;number&gt;<\/span><\/td>\n<td style=\"width: 76.824%; height: 387px; text-align: justify;\"><span style=\"color: #023d6b;\">Slice index, e.g. <code>0<\/code>.<\/span><br><span style=\"color: #023d6b;\">This line and all following lines should contain only one number each. The numbers denote the slice index of from the list of loaded slice files as specified in the lines (27+<em>N<\/em><sub>abr<\/sub>) and (28+<em>N<\/em><sub>abr<\/sub>). Slice indices are numbers from 0 up to <em>N<\/em><sub>sf<\/sub> &#8211; 1, where <em>N<\/em><sub>sf<\/sub> is the number of loaded slice files specified in line (28+<em>N<\/em><sub>abr<\/sub>) above. An example sequence with 8 object slices realized with 4 loaded slice phase-gratings could be 0, 1, 2, 3, 0, 1, 2, 3. You are however completely free in choosing any possible sequence of slices to form the sample structure along the <i>z<\/i> direction.<\/span><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:5%\"><\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:40%\">\n<h4 style=\"text-align: left;\">Control Files<\/h4>\n\u00a0\n<p class=\"sub1\" style=\"text-align: justify;\">The calculation setup and the physical parameters of multislice calculations with MSA are controlled by parameter files. The parameter files are text files containing lists of values and strings in fix sequences. You may generate your own parameter files or export an MSA parameter file from a setup done with the <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/\">Dr. Probe graphical user interface<\/a><\/strong>.<\/p>\n\n\u00a0\n<p class=\"sub1\" style=\"text-align: justify;\">The table given below describes the structure of the MSA main parameter file and gives a short description of the meaning for each parameter. The parameter file is a mandatory parameter when calling MSA and may link to a detector parameter file.<\/p>\n\n\u00a0\n<h1>\u00a0<\/h1>\n<h5 style=\"text-align: left;\">Detector File<\/h5>\n\u00a0\n<p class=\"sub1\" style=\"text-align: justify;\">In line 5 of the MSA parameter file you may link to another parameter file defining multiple detectors. A detector parameter file is also a text file listing a fix sequence of parameters. You may generate your own detector parameter file from the table below or by exporting a detector setup of the <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/\">Dr. Probe graphical user interface<\/a><\/strong>.<\/p>\n<p style=\"text-align: justify;\">\u00a0<\/p>\n<p class=\"sub1\" style=\"text-align: justify;\">The table given below describes the structure of the parameter file and gives a short description of the meaning for each parameter.<\/p>\n<h2>\u00a0<\/h2>\n<img loading=\"lazy\" decoding=\"async\" class=\"aligncenter wp-image-3403\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe_msa_control_file-266x300.jpg\" alt=\"\" width=\"400\" height=\"452\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe_msa_control_file-266x300.jpg 266w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe_msa_control_file-906x1024.jpg 906w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe_msa_control_file-768x868.jpg 768w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe_msa_control_file.jpg 1048w\" sizes=\"auto, (max-width: 400px) 100vw, 400px\" \/>\n\n\u00a0\n\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<h5 style=\"text-align: justify;\">Detector Sensitivity<\/h5>\n&nbsp;\n<p style=\"text-align: justify;\">Information about the detector sensitivity can be found <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-gui\/dr-probe-documentation-gui-instrument\/#Sensitivity\">here<\/a><\/strong>.<\/p>\n\n&nbsp;\n<h1>&nbsp;<\/h1>\n<h5 style=\"text-align: justify;\"><a id=\"Aberration\"><\/a>Aberration Indexing<\/h5>\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">The control files of the programs <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-msa\/\">MSA<\/a><\/strong> and <strong><a href=\"https:\/\/er-c.org\/index.php\/software\/stem-stm-simulation\/dr-probe\/dr-probe-documentation\/dr-probe-documentation-wavimg\/\">WAVIMG<\/a><\/strong> contain options to define the probe and imaging aberration states, respectively. The programs support aberration coefficients up to the 8th order. Descriptions are given here of how to define aberrations in these files.<\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">Aberration definitions in the parameter control files are an index number followed by two coefficient values.<\/p>\n\n&nbsp;\n<p class=\"sub1\">Examples:<\/p>\n\n&nbsp;\n<p style=\"text-align: left;\">&#8211; defocus of 5.8 nm:<code> 1 5.8 0.0<\/code><\/p>\n<p style=\"text-align: left;\">&#8211; star aberration of 4.7 \u00b5m at 30\u00b0:<code> 6 4070. 2350.<\/code><\/p>\n\n&nbsp;\n<p class=\"sub1\" style=\"text-align: justify;\">The index number (0 &#8230; 23) identifies the aberration type and the two values are the x and y components of the respective aberration coefficient in nanometer units. A complete aberration list is given below including typical coefficient notations.<\/p>\n<h2>&nbsp;<\/h2>\n<img loading=\"lazy\" decoding=\"async\" class=\"aligncenter wp-image-3393\" src=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe_aberration_coefficient-627x1024.jpg\" alt=\"\" width=\"400\" height=\"653\" srcset=\"https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe_aberration_coefficient-627x1024.jpg 627w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe_aberration_coefficient-184x300.jpg 184w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe_aberration_coefficient-768x1254.jpg 768w, https:\/\/er-c.org\/wp-content\/uploads\/2021\/05\/drprobe_aberration_coefficient.jpg 844w\" sizes=\"auto, (max-width: 400px) 100vw, 400px\" \/>\n\n\n\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:10%\"><\/div>\n<\/div>\n<\/div>\n<\/div><\/div>\n\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":2,"featured_media":0,"parent":2568,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"templates\/builder-fullwidth-std.php","meta":{"_themeisle_gutenberg_block_has_review":false,"footnotes":""},"class_list":["post-3084","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3084","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/comments?post=3084"}],"version-history":[{"count":35,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3084\/revisions"}],"predecessor-version":[{"id":3408,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/3084\/revisions\/3408"}],"up":[{"embeddable":true,"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/pages\/2568"}],"wp:attachment":[{"href":"https:\/\/er-c.org\/index.php\/wp-json\/wp\/v2\/media?parent=3084"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}